PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.3756s0013.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 195aa MW: 21932.2 Da PI: 7.4682

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.3756s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84.5	2.6e-26	12	111	6	89
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasn 84 +r+ T+ R RR+Rl+++caa++F+L++eLGf++d+ t+ WLl++a+pai ++tg + + ++s +s ++ Cagra.3756s0013.1.p 12 RRTRMTPTSSKDRHRRIRLPVTCAAQVFQLTKELGFKTDGATVGWLLRNAEPAILAATGHgldatskdtpsD------F-NHSYMNSYNF 94 566667799999************************************************665443222220......2.2222222222 PP TCP 85 sssg............k 89 ++++ Cagra.3756s0013.1.p 95 HGNHifynspidnsvhY 111 22223344444333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	16.402	9	68	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.1E-22	19	95	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDMRNNKNNT ERRTRMTPTS SKDRHRRIRL PVTCAAQVFQ LTKELGFKTD GATVGWLLRN 60 AEPAILAATG HGLDATSKDT PSDFNHSYMN SYNFHGNHIF YNSPIDNSVH YADTSGLASH 120 PRENITGHHG TVFPGSSTSF PDLMVNHYRP GHGMLRHSVP RPQPQQQPQQ QPLSDDFDEV 180 ETVMAEQGYY QPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.3756s0013.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291936.2	1e-119	transcription factor TCP15
Swissprot	Q9M1U4	5e-24	TCP16_ARATH; Transcription factor TCP16
TrEMBL	R0H6B8	1e-107	R0H6B8_9BRAS; Uncharacterized protein
STRING	Cagra.3756s0013.1.p	1e-145	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16163	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	4e-24	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	Cagra.3756s0013.1.p

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]