PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3793s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 175aa    MW: 19701.6 Da    PI: 4.1329
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3793s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-171599898
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                          +  +s+ l +p ++ e+   + + +kt +l+ + g+ W+v +  + k+++++++kGW +Fv +n+Lk+g+++ F +dg   +++ v++f 
  Cagra.3793s0014.1.p 15 LSQYSSDYLLIPCSYYEHL--PRRLPKTAILMGTGGKIWKVAM--KSKQEQVYFEKGWANFVADNDLKDGEVLSFVFDG--YRRYEVSIFG 99
                         556678889******9544..456899****************..999999*************************876..4445777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.63E-227103IPR015300DNA-binding pseudobarrel domain
CDDcd100174.83E-19898No hitNo description
PROSITE profilePS5086313.8038101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-218103IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-1410101IPR003340B3 DNA binding domain
PfamPF023621.6E-141298IPR003340B3 DNA binding domain
PfamPF004844.9E-555160IPR001765Carbonic anhydrase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0004089Molecular Functioncarbonate dehydratase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MASGDVLPRF FSVYLSQYSS DYLLIPCSYY EHLPRRLPKT AILMGTGGKI WKVAMKSKQE  60
QVYFEKGWAN FVADNDLKDG EVLSFVFDGY RRYEVSIFGH GGCKEIRAAV EVEEISDGTE  120
SEKSDDSLDS VTQAEEINDD EETKRDTSLD SVTTQVEEIS DDETKNDKDY SPES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-19910310104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3793s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0189073e-35AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankCP0026863e-35CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414513.19e-86PREDICTED: B3 domain-containing protein At3g06220-like isoform X2
RefseqXP_019093818.17e-86PREDICTED: B3 domain-containing protein At3g06220-like
SwissprotQ1PES75e-70Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLR0H1D41e-73R0H1D4_9BRAS; Uncharacterized protein
STRINGCagra.3793s0014.1.p1e-125(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-72B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]