PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3802s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 341aa    MW: 37988.7 Da    PI: 9.6937
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3802s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053628123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C k F +      H+r H
  Cagra.3802s0006.1.p  6 HVCGVCRKKFATLKGVYGHQRIH 28
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-8428No hitNo description
PROSITE profilePS501579.847633IPR007087Zinc finger, C2H2
SMARTSM003550.65628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-8116143No hitNo description
PfamPF139125.1E-8121145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-5121143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99121143IPR007087Zinc finger, C2H2
SMARTSM003550.071121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSQKFHVCGV CRKKFATLKG VYGHQRIHSS KSNRIEVEDG LQRIWGLKKS RVCSVSASSA  60
KGSSFMTPIE KHEVIEAAIN LVMLSRRFYD FASIRSYDFM DLELQPCPKR SKLQKKTCFG  120
YKCDKCDKSF GCYQALGGHQ RLHRSILAHK RAYTEAKKIV TQPSSFGVFQ EEKILQCVEP  180
KPEFHELLGR SGYEKSSTCS KIRFSAVPSP SEAKKIVSQP SSFGVSQEKI LHCAESIDDF  240
CEPLALSGFD KSNSCSKTRF SALHCPLRSK SHSSCKLKIR GKSFVCSQAL GGHQTLHRPL  300
KGLLASDKVY TEYDSSMCGM TDSEASKFVS QPSNFNTQGI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3802s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638995.10.0LOW QUALITY PROTEIN: zinc finger protein 43
TrEMBLR0H2120.0R0H212_9BRAS; Uncharacterized protein
STRINGCagra.3802s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.11e-118C2H2 family protein