PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3802s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 398aa    MW: 44337.3 Da    PI: 8.7713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3802s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H226.31.8e-08339361123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C++CgksF r+ +L +H+r+H
  Cagra.3802s0007.1.p 339 YDCKICGKSFVRPQSLSNHQRVH 361
                          88*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.27597IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-97599IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.67975102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-47697IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.55E-87697No hitNo description
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SuperFamilySSF576678.55E-8125152No hitNo description
PROSITE profilePS5015711.593130157IPR007087Zinc finger, C2H2
SMARTSM003550.36130152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4130152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-8130154IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SMARTSM0035556226246IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-5226247IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-4226237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.46E-7226246No hitNo description
SuperFamilySSF576672.46E-7334361No hitNo description
SMARTSM003555.0E-4339361IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.1E-8339361IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.36339366IPR007087Zinc finger, C2H2
PfamPF000965.3E-6339361IPR007087Zinc finger, C2H2
PROSITE patternPS000280341361IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDEAAMSLVM LSERVCGDES MGLDQIKPIK EKVFDCVESI LGFKEMFTHL GLEKSVTCSD  60
VVVALRSELQ SNSSRECNIC GKSFGCYQAL GGHKRLHRSI KGKLESKEES SLGKKTVSNP  120
SERLESSLGY KCSVCGKNFG CFQALGGHKR LHRSIKGKLE SKEENTKDGS SLFGSSEDKK  180
IVSEPSEFEV SQEGKIVDCV ESKQDFRELL PLNCELQKRP ESSSSYKCNV CGKSFGQALG  240
GHKGLHRLIR KQSARKKKYT ESDHSLSHSS EAKKIVSKPS SFEVSQEKVL HCVELKQDFS  300
ELFSYSGLDE SSSSCSKTTS FSALPSTLRC ELQKKTQSYD CKICGKSFVR PQSLSNHQRV  360
HRPNSEQLSR KRKNTKDYNS LSDSLEAKKI VTQPLSFE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3802s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638995.11e-142LOW QUALITY PROTEIN: zinc finger protein 43
TrEMBLR0HN180.0R0HN18_9BRAS; Uncharacterized protein
STRINGCagra.3802s0007.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.11e-85C2H2 family protein