PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3807s0033.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 458aa    MW: 51176.1 Da    PI: 9.9188
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3807s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.4e-102711894
                         --HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3 18 lpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                         +p  f +++  +++  +  +l+l++  s  +W+vkl  ++++    +++GW +F  a+ L++ D+++F++dg++ f  +v
  Cagra.3807s0033.1.p  2 IPQVFSTAYlkDLNDLG--KLKLTSdASDTTWDVKL--NGRR----FAGGWDDFSAAHCLRDDDVLLFRHDGEMVF--HV 71
                         66666666655444323..5666665899*******..8887....99*********************9987777..44 PP
2B3407.2e-13122215297
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          + + +++++l+++r+ ++k+  +++g++k+    + l ++sg+sW + l++++  g+ ++++GW++ ++an+Lk g f  Fkl+  ++++
  Cagra.3807s0033.1.p 122 CLIGVTPSNLRLNRVNFSKHLSRSNGLSKRW-CGIDLVNLSGESWALALRHDNLTGQDYIGGGWSSSCHANELKPGSFYRFKLVL-NGTR 209
                          55668999*****************988763.369999*************99999999***********************986.6666 PP

                          .EEEEE CS
                   B3  92 lvvkvf 97 
                          ++++++
  Cagra.3807s0033.1.p 210 PLLRLC 215
                          888777 PP
3B373.13.5e-23251345197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++v+ ++++l+sg+l+lp++fa+e+g+k++e  +++l d++g +W  ++   k++++++++ GW +F+ an+Lk+g+++++++++ +++
  Cagra.3807s0033.1.p 251 FLTVTFKHYMLQSGQLRLPRSFARENGIKQAE--EIILVDKNGVKWPSYVASPKQREEFYMAHGWTSFCAANKLKTGETFTLEFVRGEGT 338
                          7889999*******************999655..8***************99999999***************************99*** PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                          ++++k++
  Cagra.3807s0033.1.p 339 TPMLKFC 345
                          9**9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.29E-9172No hitNo description
PROSITE profilePS5086311.223175IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-12272IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-4277IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-11273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-12115215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-9120215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-10120216No hitNo description
PfamPF023622.5E-11121216IPR003340B3 DNA binding domain
SMARTSM010196.1E-16121218IPR003340B3 DNA binding domain
PROSITE profilePS508639.559121217IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-19244345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-20248347IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-23251345IPR003340B3 DNA binding domain
CDDcd100176.11E-17251346No hitNo description
SMARTSM010191.9E-28251348IPR003340B3 DNA binding domain
PROSITE profilePS5086314.565251347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
IIPQVFSTAY LKDLNDLGKL KLTSDASDTT WDVKLNGRRF AGGWDDFSAA HCLRDDDVLL  60
FRHDGEMVFH VTPSGRCFSQ LQSKSCSSGD DETGDDESDS KNISRKKESR VKAESSSSEI  120
FCLIGVTPSN LRLNRVNFSK HLSRSNGLSK RWCGIDLVNL SGESWALALR HDNLTGQDYI  180
GGGWSSSCHA NELKPGSFYR FKLVLNGTRP LLRLCSYIIP ERNRSGANGK ANVSKKYSRE  240
GGSASTKQNK FLTVTFKHYM LQSGQLRLPR SFARENGIKQ AEEIILVDKN GVKWPSYVAS  300
PKQREEFYMA HGWTSFCAAN KLKTGETFTL EFVRGEGTTP MLKFCFMAKA KQEEAPEETG  360
APYQKRARVS VEVGHSRRTQ APNKSSDDPK ILQRKQPLQH CSFSGEAKNV KQSIVNILTG  420
IKRFRSELEI KEQSLKASLL EIDALGEKVL KINKILK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3807s0033.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0639300.0AY063930.1 Arabidopsis thaliana unknown protein (At4g31620) mRNA, complete cds.
GenBankAY1337530.0AY133753.1 Arabidopsis thaliana clone U18158 unknown protein (At4g31620) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283653.10.0B3 domain-containing protein REM3
SwissprotQ8VZQ90.0REM3_ARATH; B3 domain-containing protein REM3
TrEMBLR0F5670.0R0F567_9BRAS; Uncharacterized protein
STRINGCagra.3807s0033.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]