PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3807s0034.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 525aa    MW: 58780.5 Da    PI: 8.5921
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3807s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.9e-13241011498
                          T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++ ++p +f+++h + k +s++l+l++  s r+Wev+l  ++++    +++GWk+F   + ++  D++ F++dg + f  +v+ f 
  Cagra.3807s0034.1.p  24 SNPIIPAEFMTKHFKGKIQSTKLKLTSvASDRVWEVQL--DGRR----FAGGWKNFSVFHSVRGDDVLSFRHDGGMAF--HVTPFG 101
                          4479*********66667999******8888*******..9998....99*********************9998998..777665 PP
2B365.76.7e-21173265599
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           +++++lk+++++l  kfa+++g+   ++  + l+de+g+sW++ l+++k+ g+ ++++GWk F+++ng+k+g ++ Fkl++ s++++v+
  Cagra.3807s0034.1.p 173 HVTPSSLKRDNMCLVSKFARSNGLGG-RECYIDLKDEHGKSWTLLLRHNKSTGQAFMRGGWKLFCRSNGIKAGSSCRFKLVQ-SGTKPVL 260
                          57899999999***********5553.3458*************************************************98.99999*9 PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                          +++ +
  Cagra.3807s0034.1.p 261 QLCPN 265
                          99975 PP
3B338.52.1e-12302392699
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvv 94 
                          +++++l+++++++p + ++e+g+ +++  ++t+ +++g++W+ +l   k++++++++ G k F  ang+k +gD +++++++  ++++ +
  Cagra.3807s0034.1.p 302 LKPYTLRTCQFRVPASLTRENGILEAG--EVTIVNKDGEEWKSYLVNVKGRDQFYIR-GCKPFFVANGIKnVGDPFTLEVIR-GGTSPIL 387
                          57899****************999777..79999***********888899999999.************9********997.88889** PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                          k+++k
  Cagra.3807s0034.1.p 388 KICSK 392
                          **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-1310103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.39111103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-1314103IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-1514103IPR003340B3 DNA binding domain
CDDcd100174.36E-1027100No hitNo description
Gene3DG3DSA:2.40.330.104.1E-20164265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-19165267IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-28169266IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83169265IPR003340B3 DNA binding domain
CDDcd100171.44E-18169264No hitNo description
PfamPF023625.8E-20173265IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-8294392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-9294391IPR015300DNA-binding pseudobarrel domain
CDDcd100172.82E-8296391No hitNo description
SMARTSM010195.3E-17297393IPR003340B3 DNA binding domain
PROSITE profilePS508637.232297393IPR003340B3 DNA binding domain
PfamPF023623.6E-12302392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MTDPLISPPN SKAFFVIDLS RQNSNPIIPA EFMTKHFKGK IQSTKLKLTS VASDRVWEVQ  60
LDGRRFAGGW KNFSVFHSVR GDDVLSFRHD GGMAFHVTPF GRSFSQIQLI SSSTSDDEHN  120
VFDAHDDDKD DDVDFGGDEN PVSEEDLCLK KTSSKKRART ETESSEETYL IAHVTPSSLK  180
RDNMCLVSKF ARSNGLGGRE CYIDLKDEHG KSWTLLLRHN KSTGQAFMRG GWKLFCRSNG  240
IKAGSSCRFK LVQSGTKPVL QLCPNTSSSK ANRKENVSES EVDEHCSETV PMHQNKILTL  300
DLKPYTLRTC QFRVPASLTR ENGILEAGEV TIVNKDGEEW KSYLVNVKGR DQFYIRGCKP  360
FFVANGIKNV GDPFTLEVIR GGTSPILKIC SKVKQASFDA HKTLERKPRM TVQAQHAEDE  420
TENRVQKKAR VCTEEGPSRC TRGLNKPSRS APENLQGKQP LQPCSISDHV KKVKQSIVET  480
LTDVRRFRSE LEIKEQNLEA SLQEIDALGE KMTGISKIFN ISEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3807s0034.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0310042e-61AL031004.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII project).
GenBankAL1615792e-61AL161579.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75.
GenBankCP0026872e-61CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283597.20.0putative B3 domain-containing protein REM4
SwissprotQ9SB790.0REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLR0GW330.0R0GW33_9BRAS; Uncharacterized protein
STRINGCagra.3807s0034.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]