PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.3823s0004.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 343aa MW: 39121 Da PI: 8.7173

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.3823s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	292	314	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H+ H Cagra.3823s0004.1.p 292 HRCGLCDKVFSTYQALGGHQTFH 314 79*************99999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.51	65	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.62	65	88	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	67	88	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.03E-5	290	316	No hit	No description
PROSITE profile	PS50157	9.078	292	319	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.2E-7	292	315	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.31	292	314	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	294	314	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MEDHQEFEKS IFEVRLNKLR NRTKKIGVGE SMNHYEKLYG LRENPKKTQK SLLVVHRRKN 60 KKSLIRCREC GKGFLYEKCL LTHRQVTHSE ESMRTSLLCS FSVVQRRKRS KRVSRYKTKS 120 TRFSVSSFTV FPVSVDDGEL LEVAESLILL SMSGGNFLNG LERFDKALDS SNQREYGDGF 180 LRNDQRHVAE ALDSNSEVDL SKDGDFEEDG VLSNEEKKLL GVSIESDGTW KTLSDCLADK 240 KASEDDESGQ QKQVRAGMLR EETDNGEKLV GQETAFEDSH SGKKGFEMNN EHRCGLCDKV 300 FSTYQALGGH QTFHRIRNKS KSQTKRCRKE PVEVGELRLM GQ*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MEDHQEFEKS IFEVRLNKLR NRTKKIGVGE SMNHYEKLYG LRENPKKTQK SLLVVHRRKN  60
KKSLIRCREC GKGFLYEKCL LTHRQVTHSE ESMRTSLLCS FSVVQRRKRS KRVSRYKTKS  120
TRFSVSSFTV FPVSVDDGEL LEVAESLILL SMSGGNFLNG LERFDKALDS SNQREYGDGF  180
LRNDQRHVAE ALDSNSEVDL SKDGDFEEDG VLSNEEKKLL GVSIESDGTW KTLSDCLADK  240
KASEDDESGQ QKQVRAGMLR EETDNGEKLV GQETAFEDSH SGKKGFEMNN EHRCGLCDKV  300
FSTYQALGGH QTFHRIRNKS KSQTKRCRKE PVEVGELRLM GQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.3823s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299242.2	0.0	uncharacterized protein LOC17893625
TrEMBL	R0I2K4	0.0	R0I2K4_9BRAS; Uncharacterized protein
STRING	Cagra.3823s0004.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7519	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15480.1	1e-20	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Cagra.3823s0004.1.p