PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3834s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BBR-BPC
Protein Properties Length: 285aa    MW: 31699.1 Da    PI: 10.2869
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3834s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind362.49.2e-11112841301
            GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdn 79 
                          mdddg+  rn+gyyepa a++k nlglqlmssi +r++k+    re+nl ++++++++++r+      m++    +++++      ++dn
  Cagra.3834s0005.1.p   1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSSI-DRNTKPflpgRESNL-MIGSNGSYHPREheasmpMNY----SWINQ------PKDN 76 
                          99**99..9*******999**************.9**************.************998888888....*****......**** PP

            GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
                          k++++l++++      p++++v+s+t+  +s+q++++p ++ s +e +      +    e ++ +k++k++ + +++++pk+kk +k+k+
  Cagra.3834s0005.1.p  77 KFFNMLPIST------PNYSNVMSDTSGSNSMQMMHQPVVNTSRFEENPAPPPRE---DEIVQPSKKRKMRGSISSPTVPKAKKPRKPKE 157
                          *******766......99****************999888887777444433333...34455677788888888999999999999999 PP

            GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
                          +s ++     ++ +++r+k  kks+dlv+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grK
  Cagra.3834s0005.1.p 158 ESGVT-----NNAHQQRVKPAKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRK 242
                          55433.....44445789************************************************************************ PP

            GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          mSqgafkk+LekLa+eGy+++n +DLk+hWA+HGtnkfvtir
  Cagra.3834s0005.1.p 243 MSQGAFKKVLEKLATEGYSFGNSIDLKSHWARHGTNKFVTIR 284
                          *****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.4E-1701284IPR010409GAGA-binding transcriptional activator
PfamPF062174.6E-1021284IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATFK GNLGLQLMSS IDRNTKPFLP GRESNLMIGS NGSYHPREHE  60
ASMPMNYSWI NQPKDNKFFN MLPISTPNYS NVMSDTSGSN SMQMMHQPVV NTSRFEENPA  120
PPPREDEIVQ PSKKRKMRGS ISSPTVPKAK KPRKPKEESG VTNNAHQQRV KPAKKSVDLV  180
INGVSMDISG LPVPVCTCTG TPQQCYRWGC GGWQSACCTT NISMYPLPMS TKRRGARISG  240
RKMSQGAFKK VLEKLATEGY SFGNSIDLKS HWARHGTNKF VTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3834s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545890.0AC254589.1 Capsella rubella clone CAP16-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291627.10.0protein BASIC PENTACYSTEINE1
SwissprotQ9SKD00.0BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLR0HH840.0R0HH84_9BRAS; Uncharacterized protein
STRINGCagra.3834s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-176basic pentacysteine1