PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3834s0005.3.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BBR-BPC
Protein Properties Length: 201aa    MW: 22335 Da    PI: 10.8587
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3834s0005.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind287.75.1e-8821200119301
            GAGA_bind 119 ledsavelreeeklealpi..eeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDes 206
                          ++++ v++++ e++ a+p    e ++ +k++k++ + +++++pk+kk +k+k++s      v+++ +++r+k  kks+dlv+ngvs+D+s
  Cagra.3834s0005.3.p  21 MHQPVVNTSRFEENPAPPPreDEIVQPSKKRKMRGSISSPTVPKAKKPRKPKEES-----GVTNNAHQQRVKPAKKSVDLVINGVSMDIS 105
                          3333333433333333332002334556666677777777777777777777744.....34444445789******************* PP

            GAGA_bind 207 tlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296
                          +lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+LekLa+eGy+++n +DLk+hWA+HGtnk
  Cagra.3834s0005.3.p 106 GLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEKLATEGYSFGNSIDLKSHWARHGTNK 195
                          ****************************************************************************************** PP

            GAGA_bind 297 fvtir 301
                          fvtir
  Cagra.3834s0005.3.p 196 FVTIR 200
                          ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.3E-973200IPR010409GAGA-binding transcriptional activator
PfamPF062171.8E-8330200IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MMMDFAIGDT MNQRLLRLKM MHQPVVNTSR FEENPAPPPR EDEIVQPSKK RKMRGSISSP  60
TVPKAKKPRK PKEESGVTNN AHQQRVKPAK KSVDLVINGV SMDISGLPVP VCTCTGTPQQ  120
CYRWGCGGWQ SACCTTNISM YPLPMSTKRR GARISGRKMS QGAFKKVLEK LATEGYSFGN  180
SIDLKSHWAR HGTNKFVTIR *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3834s0005.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545890.0AC254589.1 Capsella rubella clone CAP16-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291627.11e-123protein BASIC PENTACYSTEINE1
SwissprotQ9SKD01e-110BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLR0HH841e-121R0HH84_9BRAS; Uncharacterized protein
STRINGCagra.3834s0005.1.p1e-133(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-105basic pentacysteine1