PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3957s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 415aa    MW: 45801.2 Da    PI: 5.863
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3957s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.4e-35511432103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sw +++nsf+v+d+  fa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  Cagra.3957s0014.1.p  51 FLSKTYDMVDDPSTDSIVSWGADNNSFIVWDPPLFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 131
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k +
  Cagra.3957s0014.1.p 132 HLLKSITRRKPA 143
                          ********9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3844135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-6147140IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.89E-3647140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.2E-3151140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-195174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434090114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-19102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDGGVRSKVS TSDGGGGGGG GGSVTVESME IKPSPQPQPA AILSSNAPPP FLSKTYDMVD  60
DPSTDSIVSW GADNNSFIVW DPPLFARDLL PKNFKHNNFS SFVRQLNTYG FRKVDPDRWE  120
FANEGFLRGQ KHLLKSITRR KPAQGHGQGH QQSQHSNGQN ASVSACVEVG KFGLEEEVER  180
LKRDKNVLMQ ELVRLRQQQQ STDNQLQTMV QRLQGMENRQ QQLMSFLAKA VQSPHFLSQF  240
LQQQNQQNES SRRISDTNKK RRFKRDGIVG NNASASPDGQ IVKYQPPMHE QAKAMFKQLM  300
KMEPYKTGDD GFLLGNGTST TEGTEMETSL NHASGITLQE MPTASEIQSP SPMGTTPINV  360
SASPEATENC IPSPDGLILP EFTHMLPEIN AEKPPEDLME PNMGDSSPFL DPDLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-253914018129Heat shock factor protein 1
5d5v_B3e-253914018129Heat shock factor protein 1
5d5v_D3e-253914018129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257264NKKRRFKR
2258263KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3957s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0841100.0AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D140.0AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307334.10.0heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLR0GW980.0R0GW98_9BRAS; Uncharacterized protein
STRINGCagra.3957s0014.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]