PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4003s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 518aa    MW: 55621.6 Da    PI: 5.5982
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4003s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.53.9e-20106156455
              G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          l+W   LH++F+eave L G+ kA Pk+i ++m v+gL+++++ SHLQkYR 
  Cagra.4003s0001.1.p 106 LKWKDGLHSKFLEAVEFL-GERKALPKAIQRFMRVDGLSRKQISSHLQKYRR 156
                          79****************.9*******************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015573.4E-19106156IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.9E-18106161IPR009057Homeodomain-like
SuperFamilySSF466891.79E-12106160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
YIGETNSADD GSNQDVMVTS SNNTTYDDSN QDVMVTSSNN TDDDDSNQDV TVTSANNTAD  60
AGSNEDVTVT SSNNTADDGS NQDETVTSTN NAAGGSPAGP RRPVMLKWKD GLHSKFLEAV  120
EFLGERKALP KAIQRFMRVD GLSRKQISSH LQKYRRQMRK LKKKAAKAEL AKENRNDISA  180
SSTSCDPLDS YKTKQLNMEN LFKSQVGYGQ SSILLYKNTS NSYMLHGRPV YDLSLTRSNL  240
LPMGGSCGFS TGLLPLNQEG RSVLATPQDL SRVVELGKYG TPNGSLGMYS NQGTGHMQSN  300
YSGIFVDAHG NLFGHGGAGR VGGNNAYGSF GESFSAINLN FNNNNISNHG ASPSINPSTF  360
ASSLANDGQT ESYLLAQMYG RVPRSSNFGT SQASQVPLFG QYGTTNDVYD VARINANGYG  420
DLTGLGGGRF YGGNVNDFLG ENVGTMNMNF SNTNMTSHGS SSSSLSSPFS PLSFNMGPVQ  480
RNYNAQPDGL IPTLESLSVC NDHHDNGNQV YSQFDQNM
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4003s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR0F0J20.0R0F0J2_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.4003s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62110.19e-27G2-like family protein