PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4031s0057.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22961.6 Da    PI: 10.1626
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4031s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.43.2e-172069150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         k++e++  r +tfskR+ gi+KK +E   +C++eva+++fs+ gk y+++
  Cagra.4031s0057.1.p 20 KKVEDYADRMITFSKRKGGIFKKMNEFVAMCNVEVAILVFSQAGKAYTFA 69
                         57899********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-221289IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.381272IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-201271IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-161434IPR002100Transcription factor, MADS-box
PfamPF003192.0E-192168IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-163449IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-164970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSTKLRKGRQ TKGKQKIEMK KVEDYADRMI TFSKRKGGIF KKMNEFVAMC NVEVAILVFS  60
QAGKAYTFAY PSMDEVAARL KNPWGQELVV KDDTVPLVEA YKKRRIQDHM IKMEALDEEL  120
AQDLEKLKLL KKSRKEKKVG KMWWSIPQEG LSMKEAQRRH RALVELHDNL REMFISLSGN  180
GGASSSSAGS WGCDHSSGDE SG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4031s0057.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300167.21e-148agamous-like MADS-box protein AGL28
TrEMBLR0I4Y61e-133R0I4Y6_9BRAS; Uncharacterized protein
STRINGCagra.4031s0057.1.p1e-148(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.14e-67AGAMOUS-like 57