PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4082s0011.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 173aa MW: 19003.9 Da PI: 6.3473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4082s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	52	92	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P a K++ +++L +A++Y+k L Cagra.4082s0011.1.p 52 ARERRHRISDRFKILQSMVPGgA------KMDTVSMLDEAIRYVKFL 92 699***************966......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.097	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-14	48	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.16E-12	49	96	No hit	No description
SMART	SM00353	3.8E-12	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-12	49	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-7	52	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDDFNLSSQN PNSSSTTSSS SSPFHGHSSE TGKTKRSRST STLSTDPQSV AARERRHRIS 60 DRFKILQSMV PGGAKMDTVS MLDEAIRYVK FLKAQIWFHQ NMLVFLNDHE ATSSCTYSPA 120 AGGFEPTLFG CDDDYAPVNE TYSQGMPLTL TDSKYSPWFG SVGSYEQERG SS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4082s0011.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161746	1e-159	AL161746.2 Arabidopsis thaliana DNA chromosome 5, BAC clone T10O8 (ESSA project).
GenBank	CP002688	1e-159	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023637638.1	1e-127	transcription factor bHLH140
Swissprot	Q9M041	3e-88	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A178UDM7	9e-95	A0A178UDM7_ARATH; Transcription factor bHLH140-like protein
TrEMBL	A0A384K8T2	9e-95	A0A384K8T2_ARATH; Uncharacterized protein
STRING	Cagra.4082s0011.1.p	1e-126	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15290	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-68	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Cagra.4082s0011.1.p

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]