PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4093s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 987aa    MW: 109649 Da    PI: 5.9075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4093s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.8e-183177148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEde l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Cagra.4093s0003.1.p 31 KGQWTPEEDEVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 77
                         799****************************9.************986 PP
2Myb_DNA-binding58.51.5e-1883129148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W++eEd  ++ +v+++G + W+tI+++++ gR +kqc++rw+++l
  Cagra.4093s0003.1.p  83 KGPWSKEEDNTIIALVERYGAKKWSTISQHLP-GRIGKQCRERWHNHL 129
                          79******************************.*************97 PP
3Myb_DNA-binding53.65e-17135177145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++WT+eE++ l++a++ +G++ W+  ++ ++ gR+++++k++w+
  Cagra.4093s0003.1.p 135 KNAWTQEEELTLIRAHQIYGNK-WAELMKLLP-GRSDNSIKNHWN 177
                          689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5232677IPR017930Myb domain
SuperFamilySSF466898.61E-183091IPR009057Homeodomain-like
SMARTSM007171.3E-143079IPR001005SANT/Myb domain
PfamPF002495.4E-153177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-233394IPR009057Homeodomain-like
CDDcd001671.81E-133477No hitNo description
PROSITE profilePS5129431.36378133IPR017930Myb domain
SuperFamilySSF466893.74E-3080176IPR009057Homeodomain-like
SMARTSM007171.9E-1782131IPR001005SANT/Myb domain
PfamPF002493.4E-1783129IPR001005SANT/Myb domain
CDDcd001672.08E-1585129No hitNo description
Gene3DG3DSA:1.10.10.609.7E-2695137IPR009057Homeodomain-like
PROSITE profilePS5129418.453134184IPR017930Myb domain
SMARTSM007177.0E-15134182IPR001005SANT/Myb domain
PfamPF002498.9E-15135178IPR001005SANT/Myb domain
CDDcd001674.11E-11137177No hitNo description
Gene3DG3DSA:1.10.10.602.3E-20138184IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MKAPIIPPEG FQSELKGKHG RTSGPARRST KGQWTPEEDE VLCKAVERFQ GKNWKKIAEC  60
FKDRTDVQCL HRWQKVLNPE LVKGPWSKEE DNTIIALVER YGAKKWSTIS QHLPGRIGKQ  120
CRERWHNHLN PLINKNAWTQ EEELTLIRAH QIYGNKWAEL MKLLPGRSDN SIKNHWNSSV  180
KKKLDSYYAS GLLDQCQSSP LIALQNKSIA SSSSWMYSSG DEGNSRAGVD AEESECSQAS  240
TVFSQSTNDL QEEVKPRNEE FYMPEFHSRA EHQISNDAEP YYPSFEEVKI VVPEISCEAE  300
CSKKFQNLTC SHEVRTTTAT EDQLQGMSNE AKQDPDLDLL TDNMDNDGKN QAHRQAFQSS  360
GRLSEQPSLP NSDTDPEAQT LITDEECCRV LFPDTMKDSC TSSIKQGRNM IDPRKGKGCL  420
CSQSVESHAH ETGKLPALSR HPSSSEVQAG HNCVPLSDSD LKDPVLLRND SNPPIQGSHL  480
FGATELECKT VTNDSFIDTD GHVTSHGNDN DGIEQHGLSY IPKDSLKLVP LNSFSSPSRV  540
NRIYFPIDDK PAEKDKGALC YEPPRFPSAD IPFFSCDLVP SNSDLRQEYS PFGIRQLMIS  600
SMNCTTPLRL WDSPCHERSP DVMLNDATKS LSNAPSILKK RHRDLLSPVL DRRKDKKLKR  660
AATSSLAKDL SCLDVMLDGG DDCMSTRPSE SPENKNRHAS PSKAKDNRYS ASGWSDQEMI  720
PIDEEPKETL KLGGVTSMQN QKGCNEGGAS AKNDQETSGT FVEIQLCSPG MTGGRSDNKV  780
NTSAKDLSNQ HKRSLADIPT EEISPELPCT VDSSPLSAID KTNTTETSFD IENFNIFDGT  840
PYRKLLDTPS PWKSPLLFGS FLQSPKLPPE VTFEDIGCFM SPGERSYDAI GLMKHLSEHS  900
ATAYADALEV LGNDTPETIL KKRQLNKSIQ GKENQHHPHD QLGNRSQVER RTLDFSDCGT  960
PGKSTVSSAP PGGYSSPSSY LLKSCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-65311846159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-65311846159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1650657DRRKDKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4093s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1516460.0AF151646.1 Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds.
GenBankAF1760050.0AF176005.2 Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283062.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_023634615.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_023634616.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_023634617.10.0transcription factor MYB3R-1 isoform X1
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLR0GUI60.0R0GUI6_9BRAS; Uncharacterized protein
STRINGCagra.4093s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]