PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4122s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91658.1 Da    PI: 6.368
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4122s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181674357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cagra.4122s0002.1.p 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                         5679*****************************************************97 PP
2START169.13e-531603682205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+++d++ W + ++++++++v+ ++  g
  Cagra.4122s0002.1.p 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngG 248
                          7899******************************************************.7777777777****************9999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ s+q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl++ 
  Cagra.4122s0002.1.p 249 TVELLYMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEAC 338
                          *************************************************999999*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s  + ++kt++a+l+++++
  Cagra.4122s0002.1.p 339 SVPEVLRPLYESPKVLAQKTTMAALRQLKQ 368
                          **************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.2E-151379IPR001356Homeobox domain
SuperFamilySSF466895.13E-171579IPR009057Homeodomain-like
CDDcd000869.26E-171676No hitNo description
PfamPF000462.9E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181874IPR009057Homeodomain-like
PROSITE profilePS5007115.2731975IPR001356Homeobox domain
CDDcd146861.36E-668107No hitNo description
PROSITE profilePS5084825.535150378IPR002913START domain
CDDcd088758.27E-73154370No hitNo description
SMARTSM002341.6E-37159369IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-20159345IPR023393START-like domain
SuperFamilySSF559613.85E-36159371No hitNo description
PfamPF018528.9E-51160368IPR002913START domain
PfamPF086704.3E-52692834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MAMSCKDKLG CLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV HENSYFRQHT  120
PNPLLPAKDT SCESVVTSGQ HQLASQNPQR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVA EIVKDRPSWF RECRAVDVMN  240
VLPTANGGTV ELLYMQLYAP TTLAPPRDFW LLRYTSVLED GSLVVCERSL KSTQNGPSMP  300
LVQNFVRAEM LPSGYLIRPC DGGGSIIHIV DHMDLEACSV PEVLRPLYES PKVLAQKTTM  360
AALRQLKQIA QEVTQTNSSV NGWGRRPAAL RALSQRLSRG FNEAVNGFTD EGWSVIGDSM  420
DDVTITVNSS PDKLMGLNLT FSNGFAPVSS VVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYLA AAVKVGPCSA RVGGFGGQVI LPLAHTIEHE EFMEVIKLEG LGHSPEDAIV  540
PRDIFLLQLC SGMDESAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SAKEVSSPNR  600
TLDLASALEI GSAGTKASSD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARQYVRGII  660
SSVQRVALAL SPSHISSQVG LRTPLGTPEA QTLARWICQS YRGYMGVELL KSNSEGNESI  720
LKNLWHHTDA IICCSMKALP VFTFANQAGL DMLETTLVSL QDISLEKIFD DNGRKTLCSE  780
FPQIMQQGFA CLQGGICLSS MGRPVSYERA VAWKVLNEEE NAHCICFVFI NWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4122s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4394490.0AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBankAY0605560.0AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306297.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLR0IKW40.0R0IKW4_9BRAS; Uncharacterized protein
STRINGCagra.4122s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]