PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4137s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 221aa    MW: 25411.2 Da    PI: 4.5287
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4137s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.7e-321568255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prlrW+++LH++Fv+aveqLGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Cagra.4137s0009.1.p 15 PRLRWNSDLHNSFVQAVEQLGGENRATPKMVLQLMDVKGLTISHVKSHLQMYRS 68
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-301169IPR009057Homeodomain-like
PROSITE profilePS5129410.3051171IPR017930Myb domain
SuperFamilySSF466891.72E-141368IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-241569IPR006447Myb domain, plants
PfamPF002493.0E-61667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKTPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VKGLTISHVK  60
SHLQMYRSMK LEESMQEEIL ARRSVRVTGQ VTWWQFQQYL HNYQRLRGNA NFFQNQQREE  120
EEMYEKIITF GESSNETDQE VPSDYFTCKS LYESSTAQLN KTRDDDENGG VVAAIDDDDN  180
VLDEYGDVDD DNDVTLSLNS IKASKNEEEL SLELTLGLKA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-181670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-181670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-181670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-181670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-181670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-181670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-181670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-181670458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4137s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0740215e-47AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
GenBankAL1615015e-47AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.
GenBankCP0026875e-47CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289552.21e-161transcription repressor KAN1 isoform X1
TrEMBLA0A1P8B8R61e-126A0A1P8B8R6_ARATH; Myb-like DNA-binding domain protein
STRINGCagra.4137s0009.1.p1e-163(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.13e-38G2-like family protein