PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4137s0010.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 126aa    MW: 15271.9 Da    PI: 10.0993
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4137s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.45e-211566253
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53
                         pr++Wt + H  Fv++ve LGG+e A Pk+il+lm+ + +tl++vkSHLQ +
  Cagra.4137s0010.1.p 15 PRMQWTDDRHYLFVQVVEILGGEELAKPKKILNLMGANNITLSQVKSHLQVF 66
                         8*************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-191168IPR009057Homeodomain-like
SuperFamilySSF466892.69E-141569IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-191569IPR006447Myb domain, plants
PfamPF002496.1E-61664IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MRDSIVRSYI RSNMPRMQWT DDRHYLFVQV VEILGGEELA KPKKILNLMG ANNITLSQVK  60
SHLQVFIIHT HIIYMYRNKK KEKAKQEMRM MWQMYHRQSQ QYVQIYENLI RDVVQIEERF  120
LDILN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4137s0010.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635980.15e-71putative Myb family transcription factor At1g14600
TrEMBLR0HDE71e-71R0HDE7_9BRAS; Uncharacterized protein
STRINGCagra.4137s0010.1.p1e-87(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.18e-40G2-like family protein