PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4153s0004.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

M-type_MADS

Protein Properties

Length: 387aa MW: 44522.8 Da PI: 6.4224

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4153s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.3	2.3e-24	9	54	1	46
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 kr e++snrqvtf+kR+ngilKKA+ELS+LCd+++ +++fs+tgk Cagra.4153s0004.1.p 9 KRLESTSNRQVTFTKRKNGILKKAKELSILCDIDIVLLMFSPTGKA 54 689*****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-32	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.282	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.96E-28	2	82	No hit	No description
SuperFamily	SSF55455	4.45E-27	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.6E-21	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT FTKRKNGILK KAKELSILCD IDIVLLMFSP TGKAIAFHGE 60 HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHDFLGAR NQTIEGLSNQ 120 VAIYQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQIHKEH YGKSQLLPIE 180 CTTTQFHSGI QLPMSMGGNS SMQEANSMSW LPDNDNQQTI LPGDSSYLPQ REMDGSFPVY 240 SSCFFESTKP EDQICSNPGQ QFEHIEQQGN GCLGLQQLGD EYSYPTPFGS TLGMEEDQEK 300 KIKSEMELNN LQQQQQQQQQ QQQQQHQQQQ QDPSMYDPMA NNSSGCFQIP HDQSMFLNDH 360 HHHHHHHQNW VPDSMFGQTS YNQQPN*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT FTKRKNGILK KAKELSILCD IDIVLLMFSP TGKAIAFHGE  60
HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHDFLGAR NQTIEGLSNQ  120
VAIYQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQIHKEH YGKSQLLPIE  180
CTTTQFHSGI QLPMSMGGNS SMQEANSMSW LPDNDNQQTI LPGDSSYLPQ REMDGSFPVY  240
SSCFFESTKP EDQICSNPGQ QFEHIEQQGN GCLGLQQLGD EYSYPTPFGS TLGMEEDQEK  300
KIKSEMELNN LQQQQQQQQQ QQQQQHQQQQ QDPSMYDPMA NNSSGCFQIP HDQSMFLNDH  360
HHHHHHHQNW VPDSMFGQTS YNQQPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-14	1	92	1	90	MEF2 CHIMERA
6byy_B	2e-14	1	92	1	90	MEF2 CHIMERA
6byy_C	2e-14	1	92	1	90	MEF2 CHIMERA
6byy_D	2e-14	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4153s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY143172	0.0	AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305053.1	0.0	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	0.0	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	R0GQ92	0.0	R0GQ92_9BRAS; Uncharacterized protein
STRING	Cagra.4153s0004.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	0.0	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Cagra.4153s0004.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]