PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4153s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 253aa    MW: 28805.2 Da    PI: 5.098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4153s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg WT+eEd++lv ++ ++G g+W+  +++ g++R++k+c++rw+++l
  Cagra.4153s0008.1.p 14 RGEWTEEEDQKLVAYIDEYGVGDWRFLPERAGLRRCGKSCRLRWLNFL 61
                         89********************************************97 PP
2Myb_DNA-binding54.52.7e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g++T++E++ +++++  lG++ W++Ia+ m+ +R+++++k++w++ 
  Cagra.4153s0008.1.p  67 KGKFTPQEEQTILNLHSVLGNR-WAAIAQQMP-NRSDNDIKNHWNSC 111
                          79********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.083961IPR017930Myb domain
SuperFamilySSF466891.26E-2912108IPR009057Homeodomain-like
SMARTSM007172.8E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-221568IPR009057Homeodomain-like
CDDcd001672.33E-101661No hitNo description
PROSITE profilePS5129425.01762116IPR017930Myb domain
SMARTSM007173.7E-1566114IPR001005SANT/Myb domain
PfamPF002492.6E-1667111IPR001005SANT/Myb domain
CDDcd001671.25E-969109No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2469116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRATWFEAD GTKRGEWTEE EDQKLVAYID EYGVGDWRFL PERAGLRRCG KSCRLRWLNF  60
LRPGINKGKF TPQEEQTILN LHSVLGNRWA AIAQQMPNRS DNDIKNHWNS CLKKRLERNG  120
INPVTHQPFV SNLVVKTSLF NTECSSSSSA TASPSFSSGS ACLLNKIATG ISSRQHCVDM  180
MKNILSGPRT TSIHCHEEEE DEGEELNKDD HEKILASGYQ EEDFLMWDEE ELRRFMEEIG  240
VMEFGTTSYD CN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28141177109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4153s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303290.11e-168transcription factor MYB34
TrEMBLR0IH741e-166R0IH74_9BRAS; Uncharacterized protein
STRINGCagra.4153s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.12e-90myb domain protein 47