PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4191s0001.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ZF-HD

Protein Properties

Length: 219aa MW: 23987 Da PI: 9.316

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4191s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	111.8	3.5e-35	46	103	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++ Cagra.4191s0001.1.p 46 TVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPDD 103 799***************************99******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-16	47	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.0E-29	47	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-31	48	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.717	49	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.61E-6	174	216	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-13	179	218	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MLEVRAMDHM TPKSPEPESE TPIRIQPAKP ISFSNGFIKR HHHNVTVTYK ECLKNHAAAI 60 GGHALDGCGE FMPSPSSTPS DPTSLKCAAC GCHRNFHRRD PDDSSAALPP SSLPLSSTTT 120 AAIEYQPHHR HHPLPPPLPR SPNSSSPPPI SSSYMLLALS DLNFSAAAAA AGRHNNNIST 180 TPGSRKRFRT KFSSSQKEKM HEFADKIGWK IQKRDEDNV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4191s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117188	1e-131	AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15.
GenBank	AP002049	1e-131	AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13.
GenBank	AY093171	1e-131	AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	AY128820	1e-131	AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	CP002686	1e-131	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291497.1	1e-104	zinc-finger homeodomain protein 9
Swissprot	Q9LHF0	2e-90	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	R0HGU0	1e-103	R0HGU0_9BRAS; Uncharacterized protein
STRING	Cagra.4191s0001.1.p	1e-160	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	3e-53	homeobox protein 34

Link Out ? help Back to Top
Phytozome	Cagra.4191s0001.1.p

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]