PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4290s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 245aa    MW: 28177.3 Da    PI: 6.7232
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4290s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.41.1e-11131182556
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                          ++ +r+++NRe+A+rsR RK+  i++L++ v  L+ eN++L ++l     + 
  Cagra.4290s0007.1.p 131 RKRKRMESNRESAKRSRMRKQSHIDNLRNQVNRLDLENRELGNRLRLVLHQL 182
                          67899************************************98877655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.2E-11120184No hitNo description
SMARTSM003382.9E-14127191IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.898129192IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.59E-10131182No hitNo description
PfamPF001702.4E-9131176IPR004827Basic-leucine zipper domain
CDDcd147021.22E-17132183No hitNo description
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLSTVPAFSF SEPGLVNQFS GFQTGFTSWE WDCSDLFSVD HLSLEPEPAV PSPCYGESEA  60
GSVRTNSGNH NMKTGSDEFC TGFDDANQSD GLGKEPGSDD HKQLTAITNF GSGEQNHDRK  120
KLTQPEMTDE RKRKRMESNR ESAKRSRMRK QSHIDNLRNQ VNRLDLENRE LGNRLRLVLH  180
QLQRVNTDNN RLVTEQDILR LRLSEMRRVL IVRQLQQQQQ WELHNRRMIM TEQNHPSSII  240
DQLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118134RKKLTQPEMTDERKRKR
2143148KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4290s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937251e-151AB493725.1 Arabidopsis thaliana At4g37730 gene for hypothetical protein, partial cds, clone: RAAt4g37730.
GenBankAL0357091e-151AL035709.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T28I19 (ESSA project).
GenBankAL1615921e-151AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankCP0026871e-151CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286269.21e-172bZIP transcription factor RISBZ4
TrEMBLR0FAV81e-171R0FAV8_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.4290s0007.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-112basic leucine-zipper 7