PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4306s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 295aa    MW: 34595.6 Da    PI: 9.1838
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4306s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind66.36.8e-2113101197
                          HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
         HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                          +F++ +y++++d++ + +iswse+g+sf++++++ef +++ ++  F  +n+ SF   Ln+ gF+kv++ +         weF++++F +g
  Cagra.4306s0005.1.p  13 SFITTTYDMVDDSSSDLIISWSESGKSFIIWNPDEFYNNLFQRfCFTDNNLISFFSSLNKHGFEKVDSGK---------WEFANDNFVRG 93 
                          59************************************9999967*********************9987.........*********** PP

                          XXXXXXXX CS
         HSF_DNA-bind  90 kkelleki 97 
                          + +l+++i
  Cagra.4306s0005.1.p  94 QPHLIKNI 101
                          ******98 PP
2HSF_DNA-bind56.39.2e-181492412103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F +k+ye+++d++ + +iswse+g+sf++++++ef k++L ++     +  F  +L+ +gF+k++ +          weF++++F +++ 
  Cagra.4306s0005.1.p 149 FPTKIYEMVDDPSSDGIISWSESGKSFIIWNPREFYKDLLRRFTIPLPIFIFFFKLESFGFTKINPDM---------WEFANDNFVQNQP 229
                          899*************************************99999999****************9987.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +l+e+i rk+ e
  Cagra.4306s0005.1.p 230 QLIENIIRKHVE 241
                          ********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-24699IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-3510104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.41E-2310101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-71437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-1914101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-76678IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-21145238IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-26145238IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-21146238IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-17149238IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNSNKGSSTS ISSFITTTYD MVDDSSSDLI ISWSESGKSF IIWNPDEFYN NLFQRFCFTD  60
NNLISFFSSL NKHGFEKVDS GKWEFANDNF VRGQPHLIKN IINYIIEQNV LVQQRSDMLN  120
MEKIFKQQVK GVKYQLPPYK RNPSSKIPFP TKIYEMVDDP SSDGIISWSE SGKSFIIWNP  180
REFYKDLLRR FTIPLPIFIF FFKLESFGFT KINPDMWEFA NDNFVQNQPQ LIENIIRKHV  240
EKMDQQGKDY ARKKNVREAG DLFKLQVEEM VDMRKKMRKL PKEVKGQEVG LCKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4306s0005.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285655.10.0heat stress transcription factor A-4a
SwissprotQ6VBB29e-26HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLR0H4X10.0R0H4X1_9BRAS; Uncharacterized protein
STRINGCagra.4306s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2017156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-106HSF family protein
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]