PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4344s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 275aa    MW: 30950.2 Da    PI: 6.5217
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4344s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.92.1e-2857953128
                  NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++e++g+k+tLvf+ grapkg +t+W+mhey +
  Cagra.4344s0001.1.p   5 KSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERNVKS-GSEVIGTKRTLVFHIGRAPKGGRTEWLMHEYCM 79 
                          4678**************************************.9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.838195IPR003441NAC domain
SuperFamilySSF1019412.75E-30594IPR003441NAC domain
PfamPF023651.5E-13978IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
KSIVKSDSEW FFFCARGKKY PHGSQNRRAT KMGYWKATGK ERNVKSGSEV IGTKRTLVFH  60
IGRAPKGGRT EWLMHEYCMI GVSLDALVIC RLRRNTEFQG ATIQKSPQPN TLPEKHVNTQ  120
NDAISESISD WENMVDFYLS SESGQELLSE IAESSQSSQN PQVPSEDDFY ADILRDEIVK  180
LDDPAVSGNT LINVPRLQAE SNTTRVLPLP NMVDIQMQSL LQKLPLQNDT GEENNISMSN  240
CFIGIYSIKS INRARWDVVA WVLVMIAVLV FYLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-2369572168NAC domain-containing protein 19
3swm_B4e-2369572168NAC domain-containing protein 19
3swm_C4e-2369572168NAC domain-containing protein 19
3swm_D4e-2369572168NAC domain-containing protein 19
3swp_A4e-2369572168NAC domain-containing protein 19
3swp_B4e-2369572168NAC domain-containing protein 19
3swp_C4e-2369572168NAC domain-containing protein 19
3swp_D4e-2369572168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4344s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292920.10.0NAC domain-containing protein 60 isoform X2
SwissprotQ9LXL90.0NAC60_ARATH; NAC domain-containing protein 60
TrEMBLR0HPC60.0R0HPC6_9BRAS; Uncharacterized protein
STRINGCagra.4344s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.11e-172NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]