PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4348s0009.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 257aa MW: 27439.4 Da PI: 10.1467

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4348s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.5	2.3e-38	30	150	3	131
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s a++ Cagra.4348s0009.1.p 30 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIR--------GANS 111 79*************************************************************999997772222222........2222 PP TCP 93 saakskksqksaasalnlakesrakarararertrekmr 131 ++ +s+ ++k++++ l + +r ra e t+ +++ Cagra.4348s0009.1.p 112 TSLSSSLDHKPTTTLLGSSSPFILGKRVRADEDTHHNNS 150 333333333333333333333334444444443333222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.7E-34	35	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	35	89	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSNNNNNDVG VMISSNGSAL IEQQQAPVVV KKPPAKDRHS KVDGRGRRIR MPIICAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TASVSIRGAN STSLSSSLDH 120 KPTTTLLGSS SPFILGKRVR ADEDTHHNNS SNSNGSGGNN KDETFTTTPG GFWAVPARPD 180 FGQVWSFTGG VPQEMFLQQQ HHHQQPLFVH QQQQQQAAMG EASAARVGNY LPGHLNLLAS 240 LSGGSPGSGR REDDPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4348s0009.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023636329.1	1e-146	transcription factor TCP7
Swissprot	Q9FMX2	1e-133	TCP7_ARATH; Transcription factor TCP7
TrEMBL	R0H8F7	1e-145	R0H8F7_9BRAS; Uncharacterized protein
STRING	Cagra.4348s0009.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-96	TCP family protein

Link Out ? help Back to Top
Phytozome	Cagra.4348s0009.1.p