PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4408s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 155aa    MW: 17047.7 Da    PI: 3.8843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4408s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.1e-0911372955
                  AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55
                         +r++lg++ tae+Aa+a++ a+++l+g
  Cagra.4408s0001.1.p 11 TRIWLGSYETAEMAAAAYDSAALYLRG 37
                         89***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.839145IPR001471AP2/ERF domain
SMARTSM003806.1E-12151IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-11946IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-151046IPR001471AP2/ERF domain
PfamPF008479.6E-51137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGQMGVGDPG TRIWLGSYET AEMAAAAYDS AALYLRGSET HLNFPELANS FPQPASSSSK  60
HVQAAAQEAA LMFKLPGGSS NEPTQESGQG LSRVGLSPDE IQAINEFPLD SPRLGWMQDL  120
EVNDYEELYG QYFGQYDRGD FYEMQQQQSI WDFM*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4408s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306164.13e-93ethylene-responsive transcription factor ERF022
SwissprotQ9LQ281e-66ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLR0GT167e-92R0GT16_9BRAS; Uncharacterized protein
STRINGCagra.4408s0001.1.p1e-110(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-67ERF family protein