PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4440s0003.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 174aa MW: 19355.8 Da PI: 9.6568

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4440s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.4	2.7e-30	12	137	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg.. 88 +++++h+++h vggRdRR+Rl+a++a ++F+L++eLGf +d++t++WLlq+a+pai ++tg ++++++ +++++ + Cagra.4440s0003.1.p 12 KATRSHKDRHVRVGGRDRRIRLPANVAPQLFKLTKELGFHTDGETVNWLLQNAEPAIFAATGHgiNTTPNNVINSNNNI--------Hry 93 5789***********************************************************7744444333111111........111 PP TCP 89 ...........................................k 89 Cagra.4440s0003.1.p 94 slisgnnctinniftctgvntghpemvfpgttmkehgtsstfpV 137 22222233444555555555555555555554444444444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.5E-26	16	125	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.86	17	71	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MVSRKEMKNQ QKATRSHKDR HVRVGGRDRR IRLPANVAPQ LFKLTKELGF HTDGETVNWL 60 LQNAEPAIFA ATGHGINTTP NNVINSNNNI HRYSLISGNN CTINNIFTCT GVNTGHPEMV 120 FPGTTMKEHG TSSTFPVKAE EDVPSQNPQQ QPQGPQLGFE CVKMEKKSYV WSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00390	DAP	Transfer from AT3G45150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4440s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006292227.2	4e-97	transcription factor TCP16
Swissprot	Q9M1U4	2e-53	TCP16_ARATH; Transcription factor TCP16
TrEMBL	R0HIU4	8e-85	R0HIU4_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.4440s0003.1.p	1e-128	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	6e-31	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	Cagra.4440s0003.1.p

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]