PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4538s0003.2.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Dof

Protein Properties

Length: 320aa MW: 34363.8 Da PI: 10.095

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4538s0003.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.7e-39	77	135	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 lkcprCds+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk + Cagra.4538s0003.2.p 77 GVLKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGK 135 5789***************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-37	60	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	78	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.683	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MSSTNSNNHP HHLQLQESGS LVSAHHQVLS HHFPQNPNPN HHHVDTTVAA ATIDPGSLNG 60 QAAERARLAK NHQPPEGVLK CPRCDSANTK FCYFNNYNLT QPRHFCKACR RYWTRGGALR 120 NVPVGGGCRR NKKGKSVSSK SSSSSSQNKP STSMVNATSP TTTSNVHLQP NSQFPFLPTL 180 QNLTHLGGIG LNLAPMNGNT SSSSFLNDLG FYHGGNTSGP VMSNNNNNEN NNIMTSLGTA 240 NNNFALFDRT MGLFNFPNES NMGLSSSGAT RASQTAPVKM EDISRSVSGL TSQGNQSNQY 300 WTGTGLPGSS SNNHHQHLM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4538s0003.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005727	0.0	AC005727.3 Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence.
GenBank	BT032877	0.0	BT032877.1 Arabidopsis thaliana unknown protein (At2g28810) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023640027.1	0.0	dof zinc finger protein DOF2.2 isoform X2
Swissprot	Q9ZV33	1e-170	DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBL	R0HD44	0.0	R0HD44_9BRAS; Uncharacterized protein
STRING	Cagra.4538s0003.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	1e-151	Dof family protein

Link Out ? help Back to Top
Phytozome	Cagra.4538s0003.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]