PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4553s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 308aa    MW: 34675.4 Da    PI: 7.1303
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4553s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.51.9e-37261172102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed++++++isw+e+g+sf+v+++++fak++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF++++Fk+g+k
  Cagra.4553s0008.1.p  26 FLTKTYNLVEDSSINDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDYFKRGEK 106
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Cagra.4553s0008.1.p 107 HLLREIQRRKI 117
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.5E-5722115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3523115IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3823115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNSPPVDAMM TGGVESSSQR SIPTPFLTKT YNLVEDSSIN DVISWNEDGS SFIVWNPTDF  60
AKDLLPKHFK HNNFSSFVRQ LNTYGFKKVV PDRWEFSNDY FKRGEKHLLR EIQRRKITTS  120
SSSHQAVVVP LSEQRIQTTV VSPSNSGEDH NNNNNNQVMS SSPTSWYCQT TTGDGGLSVE  180
LLEENEKLRN QNIQLNRELT QMKSVCDNIF SLMSNYVGSQ PDRSYSLGGS TSQPVEFLPA  240
KRFSDAEVEE EEASPRLFGV PIGLKRTRSE GAKVKTTTAA VGEKKSGEET PWLRHYNYNR  300
TNQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B5e-24261205109Heat shock factor protein 2
5d8l_B5e-24261205109Heat shock factor protein 2
5d8l_D5e-24261205109Heat shock factor protein 2
5d8l_F5e-24261205109Heat shock factor protein 2
5d8l_H5e-24261205109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4553s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280765.20.0heat stress transcription factor B-2a
SwissprotQ9SCW41e-180HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLR0GR580.0R0GR58_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.4553s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-179heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]