PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4622s0012.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 339aa    MW: 38846.8 Da    PI: 5.3699
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4622s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.97.8e-34711632103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++ei++d  ++ ++sws + +sf+++d+ ef++++LpkyFkh+nf+SF+RQLn+YgFkkv++++         weF+++ F+ gkk
  Cagra.4622s0012.1.p  71 FLRKTFEIVDDVVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLNTYGFKKVDSDR---------WEFANEGFQGGKK 151
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++ikr++s+
  Cagra.4622s0012.1.p 152 HLLKNIKRRRSK 163
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-5167160IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.06E-3068160IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.5E-3569160IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-177194IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.3E-3071160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-17109121IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340110134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-17122134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MTVVPDVADI ESSSSLGQET ATETVKDGQT RSEGSSDDVV SLTEDDAVNL NDSSSSVGFW  60
KLHEIGLITP FLRKTFEIVD DVVTDPVVSW SPTRKSFIIW DSYEFSENLL PKYFKHKNFS  120
SFIRQLNTYG FKKVDSDRWE FANEGFQGGK KHLLKNIKRR RSKTNCNKEA SITGLRTETE  180
VELLKEEQSP MRLEMLKLKQ QQEESQHQMV TVQEKIQGVE LEQRHMLSFF AKLAKDQRYV  240
EKLMRKRKMK QQRELEANEF VKKLKLLQDQ ETEKNLGDVD QSNLIIREFM AMAATQRDHD  300
SDISMNNQSG NTRCQLNTED LLVDVGSMGG NKTDVDVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-216816026129Heat shock factor protein 1
5d5v_B6e-216816026129Heat shock factor protein 1
5d5v_D6e-216816026129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159LKNIKRR
2243248MRKRKM
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4622s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282343.10.0heat stress transcription factor A-9
SwissprotQ9LVW21e-175HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLR0F1R40.0R0F1R4_9BRAS; Uncharacterized protein
STRINGCagra.4622s0012.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-166heat shock transcription factor A9