PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4747s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 290aa    MW: 32435.4 Da    PI: 5.4687
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4747s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1254.1e-08134186456
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                           k+ rr   NRe+A+rs + K + i eLe+  k +e+eN  +++++ +l+k  
  Cagra.4747s0001.1.p 134 PKKVRRIVANRESAQRSNKNKGQHITELERGTKFFEKENALMINKMTMLEKDK 186
                          58899999**************************************9999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.9E-5131195IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.3E-8135185No hitNo description
PfamPF001701.4E-6135185IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.2E-7135189No hitNo description
CDDcd147039.52E-15136187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNGGDNTTPP EPRPMTQEAP VNSSLRPLSP SPSSVLHHPL GPVSLSPSTT SNVNRRTQGE  60
SIETLSGHYK SISMDTGLND FLNIPVSSGY ISSTSLVDGD DNTFDLGFAE DVYTADELEK  120
ISKCPKLSRI QNDPKKVRRI VANRESAQRS NKNKGQHITE LERGTKFFEK ENALMINKMT  180
MLEKDKIVLD DKKKEFKIRL ESLEEEEKVH NEIEKLKATT TLTEELSVEA QLMKVVLADN  240
ERLSVELQQL KMSASEVMQS HKLFEGSNKH QTDPNMLQQL NVNESNQQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4747s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR0HRR30.0R0HRR3_9BRAS; Uncharacterized protein
STRINGCagra.4747s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2177522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G12940.11e-39bZIP family protein