PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4850s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 180aa    MW: 20836.6 Da    PI: 10.1214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4850s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-091258347
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                         +W+ +Ed  + +a + + ++   +W+ Ia  ++ g+t +q++++++ +
  Cagra.4850s0001.1.p 12 SWSRDEDIAFERALAIYANEteiRWEEIALVVP-GKTIEQIIEHYNVL 58
                         7********************************.***********976 PP
2Myb_DNA-binding39.71.1e-12118162347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT +E+ +++ + +++G+g+W++I+r+  ++Rt  q+ s+ qky
  Cagra.4850s0001.1.p 118 PWTSDEHRQFLLGLEKFGKGDWRSISRHCVLTRTTMQVASHAQKY 162
                          7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.183862IPR017884SANT domain
SMARTSM007175.8E-9961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-51160IPR009057Homeodomain-like
SuperFamilySSF466895.46E-111168IPR009057Homeodomain-like
PfamPF002495.7E-81258IPR001005SANT/Myb domain
CDDcd001672.04E-81259No hitNo description
Gene3DG3DSA:1.10.10.601.3E-10109165IPR009057Homeodomain-like
PROSITE profilePS5129415.152111167IPR017930Myb domain
SuperFamilySSF466892.14E-16112167IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-15114165IPR006447Myb domain, plants
SMARTSM007171.6E-8115165IPR001005SANT/Myb domain
PfamPF002491.2E-9118162IPR001005SANT/Myb domain
CDDcd001673.37E-8118162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MNLGENASVG SSWSRDEDIA FERALAIYAN ETEIRWEEIA LVVPGKTIEQ IIEHYNVLVR  60
DVMMIESGHV PLPACYDFSE EPNHNASGKG KSILEYGRHH RKKNGKSKPK QQRKKGIPWT  120
SDEHRQFLLG LEKFGKGDWR SISRHCVLTR TTMQVASHAQ KYYKRLNSKN KHRNRKSIHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-161073871RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4850s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289672.11e-109transcription factor SRM1
SwissprotQ9FNN62e-66SRM1_ARATH; Transcription factor SRM1
TrEMBLR0HC281e-108R0HC28_9BRAS; Uncharacterized protein
STRINGCagra.4850s0001.1.p1e-133(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.13e-88Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]