PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4923s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 311aa    MW: 34986.3 Da    PI: 6.3572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4923s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-13135182254
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI +L
  Cagra.4923s0009.1.p 135 EVSHVEAERQRREKLNHRFYALRAIVPNV-----SRMDKASLLADAVSYIEDL 182
                          579*************************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-12482IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.939133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-18133201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.57E-13134183No hitNo description
PfamPF000107.7E-11136182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-17137202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MFYATSFYGE DGLWRKEFSD ESLVWLTGLD ELRFSNSERA KEASFHGVHT FVSAPIHNCI  60
IELGSSDSIN LNWNFINRVK SILFGSGKTL ELTNQTGSYP KPVESDHSEI GNQQLRSENK  120
RRKKLEKTDG ATAKEVSHVE AERQRREKLN HRFYALRAIV PNVSRMDKAS LLADAVSYIE  180
DLKSRIDHLE TEMKSLKTTM TETDKLDHNS SNTSPSSVDQ VNQKPSEANL EVQAKIVGDE  240
AVVRVQTENV NHPTYALMST LMEMDCRVQH ANASRLGQIM VQDVVVLVPD GLRSEDMLRT  300
TLVRNLSSLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-23136203774Transcription factor MYC2
5gnj_B2e-23136203774Transcription factor MYC2
5gnj_E2e-23136203774Transcription factor MYC2
5gnj_F2e-23136203774Transcription factor MYC2
5gnj_G2e-23136203774Transcription factor MYC2
5gnj_I2e-23136203774Transcription factor MYC2
5gnj_M2e-23136203774Transcription factor MYC2
5gnj_N2e-23136203774Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4923s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287856.10.0transcription factor bHLH14
SwissprotO230901e-148BH014_ARATH; Transcription factor bHLH14
TrEMBLR0GV070.0R0GV07_9BRAS; Uncharacterized protein
STRINGCagra.4923s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-150bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]