PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4962s0003.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

SRS

Protein Properties

Length: 328aa MW: 36576.4 Da PI: 9.8477

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4962s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	22.6	2.9e-07	28	96	5	72
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaas 72 + +C +CGn a+ C ++ C+ CC + C hv v aa e++q+ +++ss+++as+ ++ + Cagra.4962s0003.1.p 28 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLK--V-AATPGEKMQAPSTPSSDQKASEgtpgTTTRV 96 568*******************************964..3.3444455555555544444444233322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.1E-6	30	103	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MATSSPSLSN NGLSAVVTPP KTLRGLNKPK CIQCGNVARS RCPFQSCKGC CSRAENPCPI 60 HVLKVAATPG EKMQAPSTPS SDQKASEGTP GTTTRVSSIR QLSSNFAQFN NLNASSRQRK 120 PLTIKDAQAL NEWRFTKLKE YRDRNIEVEN EAFDRYMSNV NLLEEAISFT SVPDEEVPRA 180 AASERNNEEK NIPELKLRLR TSSARTEKFK KQITETIKAG LFKLQRTEYG GSSDDEDEKK 240 RRTKRKKWQD KGSALNEIVD KLNKARTEED LKSCLEMKSK LCSHVTSPAA SEKNKVFPAQ 300 VRKVEMSEEA LQKISENLQS FDNVVTL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	243	KKRRTK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4962s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493492	0.0	AB493492.1 Arabidopsis thaliana At1g32730 mRNA for hypothetical protein, partial cds, clone: RAAt1g32730.
GenBank	AY084750	0.0	AY084750.1 Arabidopsis thaliana clone 116730 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305346.1	0.0	uncharacterized protein LOC17897965
TrEMBL	R0I7D5	0.0	R0I7D5_9BRAS; Uncharacterized protein
STRING	Cagra.4962s0003.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7362	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	0.0

Link Out ? help Back to Top
Phytozome	Cagra.4962s0003.1.p