PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4978s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 439aa    MW: 47270.7 Da    PI: 10.1708
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4978s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.32.9e-12360412557
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                          +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N +L+ +  e+ ++ +
  Cagra.4978s0002.1.p 360 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKTNLELQRKQAEMMEMQK 412
                          69************************************999766555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-8356421IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.438358409IPR004827Basic-leucine zipper domain
CDDcd147071.11E-24360412No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-12360416No hitNo description
SuperFamilySSF579592.09E-9360409No hitNo description
PfamPF001703.9E-10360413IPR004827Basic-leucine zipper domain
PROSITE patternPS000360363378IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGTHINFSNL GGGGTSGGEG SNQMKPTGDV MPLARQSSVY SLTFDELQST LGGPGKDFGS  60
MNMDELLKSI WTAEEAQAIA MTSSSTAAAV AQPTAGIPVG NLQRQGSLTL PRTISQKTVD  120
EVWKCLVTKD SNGNMGSSSG GGGESNAPPG RQQTLGEMTL EEFLFRAGVV REDNSVQQMG  180
QVNGNNNDGF YGNNTAAGGL GFGFGQPNQN SISFNGNNDS MILNQPPGLG LKVGGPIQQQ  240
QQQQQQHQVQ QQQLLQQQQQ QQLQQLNHPH PQQRLPQTIF PKQANVAFSA PVSIVNKGFA  300
GAANNSVSNN NGLASFGTGV TVAATSPGTS SAENNSLSPV PYVLNRGRRS NTGLEKVIER  360
RQRRMIKNRE SAARSRARKQ AYTLELEAEI EKLKKTNLEL QRKQAEMMEM QKNELKESSK  420
QPWGSKRQCL RRTLTGPW*
Functional Description ? help Back to Top
Source Description
UniProtFunctions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4978s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641143.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
SwissprotQ9M7Q20.0AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBLR0G5090.0R0G509_9BRAS; Uncharacterized protein
STRINGCagra.4978s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.11e-168ABRE binding factor 4
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]
  3. Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA
    Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance.
    Plant Mol. Biol., 2018. 98(1-2): p. 137-152
    [PMID:30143991]