PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.5017s0002.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

M-type_MADS

Protein Properties

Length: 265aa MW: 29327.2 Da PI: 9.3228

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.5017s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.9	3.6e-10	35	63	22	50
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 KKA ELSvLC+ v i +++++ l+ ++ Cagra.5017s0002.1.p 35 KKATELSVLCGNSVGFICYGPDNDLHVWP 63 79*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.391	17	66	IPR002100	Transcription factor, MADS-box
CDD	cd00266	9.60E-15	17	90	No hit	No description
SuperFamily	SSF55455	8.11E-11	20	97	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-7	22	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAPLRVKKPN KSYGLDDDLK TKRIFFKRIF PAFKKKATEL SVLCGNSVGF ICYGPDNDLH 60 VWPEPKDSPQ ALPEIVGKFN ALSDHRRMSH ASDLFDFPNL KGLSGEELRR HLDKLNSRLV 120 GIKQQKIGLL RRGNFKPKIK ETGKDDHIRV SDKGNRLGFD ELGYVFRGSH ETVSNLGSCA 180 ASKVSSDVSV SDPSLTLGFS GGDYLPVDNY GVCANEGASD LRRREFASTL FPGYDRSVLG 240 AIDDSFMANT YQTSVTDNNI RTVF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.5017s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	2e-40	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	T2K10	2e-40	AC005966.2 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006301772.2	0.0	agamous-like MADS-box protein AGL49
Swissprot	Q9ZUI9	1e-62	AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBL	R0I988	1e-166	R0I988_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.5017s0002.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11232	9	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60040.1	1e-62	AGAMOUS-like 49

Link Out ? help Back to Top
Phytozome	Cagra.5017s0002.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]