PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.5105s0005.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 208aa MW: 23989.1 Da PI: 5.8659

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.5105s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.1	5.8e-17	30	120	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk +ps + +++++++p kf++ g+k + +tle++ g + ++kl ++ ++++++ +GW+eF++a+ +keg f++F++d++s+f Cagra.5105s0005.1.p 30 FFKLVLPSTM-ENNMMRIPPKFVKLQGSK--FPDVVTLETPVGFKRSIKL--KRIGQEIWFHEGWSEFAEAHSIKEGHFLLFEYDENSSF 114 6676656555.5567******666655..7789***********..*******************************99999 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v +f+ Cagra.5105s0005.1.p 115 --HVIIFN 120 ..888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-22	24	124	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.02E-24	24	124	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.11E-17	28	120	No hit	No description
PROSITE profile	PS50863	12.83	29	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-15	30	120	IPR003340	B3 DNA binding domain
SMART	SM01019	4.5E-21	30	122	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MVTTRKTMAR DTFSSHRRQP QDPESPVKKF FKLVLPSTME NNMMRIPPKF VKLQGSKFPD 60 VVTLETPVGF KRSIKLKRIG QEIWFHEGWS EFAEAHSIKE GHFLLFEYDE NSSFHVIIFN 120 VSACEIDYPP DALHISDSDD DIVDITDKGF IGTQGTRNND QSVNGEHKLK KRPRDIELDK 180 ILHEVDVLDS NQVLKEEEED DKRVFRG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	173	KLKKRPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.5105s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229681	1e-171	AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20.
GenBank	BT006139	1e-171	BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds.
GenBank	BT008541	1e-171	BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299629.1	1e-148	B3 domain-containing protein At3g18960
Swissprot	Q84R27	1e-107	Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBL	R0GA33	1e-147	R0GA33_9BRAS; Uncharacterized protein
STRING	Cagra.5105s0005.1.p	1e-151	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	1e-108	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.5105s0005.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]