PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5134s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 224aa    MW: 25046 Da    PI: 8.2159
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5134s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof96.22.3e-301511161
               zf-Dof 11 CdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                         C+s+ntkfCy+nny  sqPry Ck+Crr+Wt+GGalrnvP+Ggg+rk kk+
  Cagra.5134s0001.1.p  1 CHSDNTKFCYFNNYRKSQPRYNCKNCRRHWTHGGALRNVPIGGGSRKIKKA 51
                         9**********************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.1E-26150IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-17150IPR003851Zinc finger, Dof-type
PROSITE profilePS5088424.53150IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
CHSDNTKFCY FNNYRKSQPR YNCKNCRRHW THGGALRNVP IGGGSRKIKK ARVEQPPASR  60
GMIPLDIHQF NPQPFPYLQG NNDFVGSFGA AAPVGNHFGP FPDLHGGMLA NVPPFQSFLP  120
NYLIDYQDVS FEQDFYDVGS VNPMINQSIG GGYVDNPDGY LISQVDQYEW SQLNFNNTAI  180
MDPGASTSGS RGPEDMTMTS DNIKRLKYNR VIKHTCHLEK HGP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00446DAPTransfer from AT4G21080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5134s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293054.11e-164dof zinc finger protein DOF4.5
SwissprotO495504e-61DOF45_ARATH; Dof zinc finger protein DOF4.5
TrEMBLR0FSX21e-163R0FSX2_9BRAS; Uncharacterized protein
STRINGCagra.5134s0001.1.p1e-167(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21080.12e-63Dof-type zinc finger domain-containing protein