PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.5392s0006.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 334aa MW: 37430.8 Da PI: 8.8666

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.5392s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.7e-13	153	200	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L l+P + kK++Ka++L A+++Ik+Lq Cagra.5392s0006.1.p 153 QEHILAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAIKHIKHLQ 200 56999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.713	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.6E-11	153	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-17	154	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-17	154	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.85E-12	155	204	No hit	No description
SMART	SM00353	3.5E-15	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MATTKNVLST RWTSELDIEE YSIIHQYHMN SLVGDFPQSL SSLDDINNSY NFDASCNNDF 60 VEEKPSKILK TTHISPKIHP FSSSNTPLSM NQPSSRILSF EKTGLKVMNH NSPNLIFSPK 120 EEEIGLPDQR KSKLIIRGTK RAQTSTRSQA NAQEHILAER KRREKLTQRF VALSALVPGL 180 KKMDKASVLG DAIKHIKHLQ EIVKEYEEQK QERTMESMVL VKKSQLVLDE THQPSSSSSS 240 DGNRDCSSSN LPEIEVRVSG NDVLIKILCE KQKGNVIKIM GEIEKLGLLI TNSNVLPFGP 300 TFDISIIAQK NINFDIKIED LVKNLSCGIS KLK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	163	ERKRRE
2	159	164	RKRREK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00273	DAP	Transfer from AT2G22750	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.5392s0006.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446549	0.0	DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBank	DQ653015	0.0	DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295910.2	0.0	transcription factor bHLH18 isoform X1
Swissprot	Q1PF17	1e-161	BH018_ARATH; Transcription factor bHLH18
TrEMBL	R0HXJ3	0.0	R0HXJ3_9BRAS; Uncharacterized protein
STRING	Cagra.5392s0006.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.2	1e-163	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.5392s0006.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]