PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5414s0046.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 216aa    MW: 23853.6 Da    PI: 10.7058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5414s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-1362108354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+ +ErrRR riN  f++Lr++lP++      K +Ka++L ++v+Y ++L
  Cagra.5414s0046.1.p  62 KKHSDAERRRRLRINCQFATLRTILPNL-----VKQDKASVLGETVRYFNEL 108
                          68*************************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-1351114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.00859108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1362113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1062108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.76E-1062113No hitNo description
SMARTSM003534.6E-1265114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.7E-4137201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MQLEQGVRPI SRCYNPTPTT YPTTMGRNLF FPGAATSSKL FSRGFSVTKP KPKTESKEAA  60
AKKHSDAERR RRLRINCQFA TLRTILPNLV KQDKASVLGE TVRYFNELKK MVQDIPTTPS  120
LEDSLRLGHC NNNRDLARVV FSCSDREGLM SEVAESLKAA KTKAVRAEIM TVGGRTKCAL  180
FVQGVNGNEG LVKLKKSLKP VVNGKISSEA KEQHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5414s0046.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775870.0AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633709.11e-147LOW QUALITY PROTEIN: transcription factor bHLH131
SwissprotP0CB251e-128BH131_ARATH; Transcription factor bHLH131
TrEMBLR0GUB71e-144R0GUB7_9BRAS; Uncharacterized protein
STRINGCagra.5414s0046.1.p1e-158(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-116bHLH family protein