PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5641s0038.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 237aa    MW: 26988.6 Da    PI: 7.6171
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5641s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.76.4e-342377155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprlrWt eLHerFv+av++LGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Cagra.5641s0038.1.p 23 KPRLRWTAELHERFVDAVAHLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9842080IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-322078IPR009057Homeodomain-like
SuperFamilySSF466895.02E-172278IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-242378IPR006447Myb domain, plants
PfamPF002491.4E-82575IPR001005SANT/Myb domain
PfamPF143796.1E-15124163IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MMQSREEMRD ESSSGLVLTT DPKPRLRWTA ELHERFVDAV AHLGGPDKAT PKTIMRVMGV  60
KGLTLYHLKS HLQKFRLGKQ PHKEHSQNHS INIRDTNRAS MLDLRRNAVF TTSPLIVGRN  120
MNEMQMEVQR RIEEEVEIER QVNQRIEAQG KYMESMLEKA CETQEASLTK DYSTLFFDCT  180
NTCNNTSSLP IPWFEDHFPS SSSMDSSTLV LPNINSNFPL QDSRSSITKG RTVCLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-192379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-192379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-192379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-192379157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00351DAPTransfer from AT3G12730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5641s0038.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0707640.0AY070764.1 Arabidopsis thaliana AT3g12730/MBK21_9 mRNA, complete cds.
GenBankAY1439160.0AY143916.1 Arabidopsis thaliana At3g12730/MBK21_9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298455.11e-178myb family transcription factor PHL12
SwissprotQ8VYI21e-165PHLC_ARATH; Myb family transcription factor PHL12
TrEMBLR0I4S51e-176R0I4S5_9BRAS; Uncharacterized protein
STRINGCagra.5641s0038.1.p1e-178(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137451726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.11e-145G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]