PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5641s0060.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 249aa    MW: 28845.4 Da    PI: 8.5938
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5641s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM431.5e-131864148
                  NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                         lppGfrFhP+d+elv++yL ++++++  +   v+ evd++k++Pwd+p
  Cagra.5641s0060.1.p 18 LPPGFRFHPRDDELVCDYLLRRTSRNLYQP-VVLIEVDLNKCDPWDIP 64
                         79********************99999777.6899***********98 PP
2NAM52.71.5e-166610786128
                  NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          tgkd+ + + +g+lvg++ktLvfy+grapkg+ktdWvmhe++l
  Cagra.5641s0060.1.p  66 TGKDRVIQR-NGRLVGMRKTLVFYRGRAPKGRKTDWVMHEFHL 107
                          899999988.99******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.0371131IPR003441NAC domain
SuperFamilySSF1019414.84E-3811132IPR003441NAC domain
PfamPF023651.5E-1419107IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MENKEEKKGF ISMVEANLPP GFRFHPRDDE LVCDYLLRRT SRNLYQPVVL IEVDLNKCDP  60
WDIPPTGKDR VIQRNGRLVG MRKTLVFYRG RAPKGRKTDW VMHEFHLQGL LLHHPRNYLK  120
EEWVLCRVFH KNNNIADRDD NTSGSDETTT TLMESNYINF DYDNIIKQHV SCFSNLSHNQ  180
INGNQSSLVS KNSNSLYNAS SDQMVLRTLL NQFTKNVEKS QSYREGSSSE SQLRTLAFQA  240
THRITDYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-281413311170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5641s0060.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882799.11e-118NAC domain-containing protein 21/22
SwissprotQ84TE62e-79NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1J3GCU01e-119A0A1J3GCU0_NOCCA; NAC domain-containing protein 21/22
STRINGCagra.5641s0060.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.11e-111NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]