PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5647s0017.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20936.6 Da    PI: 6.5428
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5647s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161664250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         +ie +  r vt+skRrngi  K +ELSvLC+a+va + +s +gk y++ 
  Cagra.5647s0017.1.p 16 KIEREKDRLVTLSKRRNGIYTKLSELSVLCGAQVAFLGYSGSGKPYTFG 64
                         6999999****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.23E-22777IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.88767IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-19766IPR002100Transcription factor, MADS-box
CDDcd002653.78E-31880No hitNo description
PRINTSPR004047.0E-15929IPR002100Transcription factor, MADS-box
PfamPF003192.3E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSSKKTKGKQ KIHIQKIERE KDRLVTLSKR RNGIYTKLSE LSVLCGAQVA FLGYSGSGKP  60
YTFGSPSFQA VVERFLNGQA SSSSSSLQQS LFDAHYEENV QELCRLYNNM VEQTRVEEAK  120
TITAATSVEP LPKDAWWKVD LTEVEDQEKK KQWLEKFERL YENMCDELDA KRQQIDDAEN  180
EK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5647s0017.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305962.11e-132agamous-like MADS-box protein AGL61
TrEMBLR0IK321e-131R0IK32_9BRAS; Uncharacterized protein
STRINGCagra.5647s0017.1.p1e-133(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-71AGAMOUS-like 64