PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5996s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 484aa    MW: 53636.9 Da    PI: 4.8972
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5996s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.12.1e-1011204822374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          +e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++      +  p + +s+++ ++++ a k +s +sPi
  Cagra.5996s0001.1.p 120 IEDLIRVVDCVESDELQLAQVVLSRLNQRlRSPAGRPLQRAAFYFKEALGSLLTG-----TNRNPIRLSSWSEIVQRIRAIKEYSGISPI 204
                          678*************************99*************************.....778899999999****************** PP

                 GRAS  91 lkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          + fsh+taNqaIl++++++     vH++Df+i+ G+Q+++L++++a+++ +   lR+T+v+++e   + e++ ++e+L++fA+e++++f+
  Cagra.5996s0001.1.p 205 PLFSHFTANQAILDSLSSQsssPFVHVVDFEIGFGGQYASLMREIAEKSVSGGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQ 292
                          ****************99977789**************************************66..9*********************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyy 264
                          +++++ k++e+l+++++r+ +gE ++V ++ +++r l       s + ++++ ++++sPkvvv+v++e  ++  +s+sF ++f++ale+y
  Cagra.5996s0001.1.p 293 IEFVLLKTFEMLSFKAIRFVEGERTVVLISPAIFRRL-------SGIADFVNNLRRVSPKVVVFVDSEgwTEIaGSGSFRREFVSALEFY 375
                          ************************************9.......34556*******************76677899************** PP

                 GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                          +++++sl+a +p+ +  ++ vE+++l+++i+ +v ++ ++   r++  ++Wre++ +aG++p++ls++a  qa++ll+k +++g++v ++
  Cagra.5996s0001.1.p 376 TMVLESLDAAAPPGDLVKKIVEAFVLRPKISAAVETAADR---RNTGDMTWREAFCAAGMRPIQLSQFADFQAECLLEKAQVRGFHVAKR 462
                          ************************************9998...99999****************************************** PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          +g+lvl+W++r+Lv++SaWr
  Cagra.5996s0001.1.p 463 QGELVLCWHGRALVATSAWR 482
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.83393462IPR005202Transcription factor GRAS
PfamPF035147.4E-99120482IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MKIPASSPQD TTTNNNSTDS NHLSMDEHVM RSMDWDSIMK ELELDDDSAP NSLKTGFPTS  60
TTDSTILPLY AVDSNLPGFP DQIQPSDFES STDVYPGQNQ ATGYGFNSLD SVDNGGFDFI  120
EDLIRVVDCV ESDELQLAQV VLSRLNQRLR SPAGRPLQRA AFYFKEALGS LLTGTNRNPI  180
RLSSWSEIVQ RIRAIKEYSG ISPIPLFSHF TANQAILDSL SSQSSSPFVH VVDFEIGFGG  240
QYASLMREIA EKSVSGGFLR VTAVVAEECA VETRLVKENL TQFAAEMKIR FQIEFVLLKT  300
FEMLSFKAIR FVEGERTVVL ISPAIFRRLS GIADFVNNLR RVSPKVVVFV DSEGWTEIAG  360
SGSFRREFVS ALEFYTMVLE SLDAAAPPGD LVKKIVEAFV LRPKISAAVE TAADRRNTGD  420
MTWREAFCAA GMRPIQLSQF ADFQAECLLE KAQVRGFHVA KRQGELVLCW HGRALVATSA  480
WRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-2712548124377Protein SCARECROW
5b3h_D3e-2712548124377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5996s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1184970.0AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11.
GenBankBT0118070.0BT011807.1 Arabidopsis thaliana At4g36710 mRNA sequence.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283643.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLR0F5610.0R0F561_9BRAS; Uncharacterized protein
STRINGCagra.5996s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]