PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6160s0026.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WOX
Protein Properties Length: 197aa    MW: 22269.9 Da    PI: 6.1583
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6160s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.6e-2177137257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          r+R+t+t++ql++Le+ +e+ + +p++++++e+A +l    ++te++V++WFqNrRa+ k+
  Cagra.6160s0026.1.p  77 RHRWTPTSTQLQILESIYEEgSGTPNRRRIREIAIELsehgQITETNVYNWFQNRRARSKR 137
                          89*****************99**************************************97 PP
2Wus_type_Homeobox1018.6e-3376139265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          +r+RWtPt++Q++iLe++y++G  tPn+++i++i+ eL+e+G+i+++NV++WFQNr+aR+++kq
  Cagra.6160s0026.1.p  76 TRHRWTPTSTQLQILESIYEEGSGTPNRRRIREIAIELSEHGQITETNVYNWFQNRRARSKRKQ 139
                          689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-1969144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-1670143IPR009057Homeodomain-like
PROSITE profilePS5007114.86873138IPR001356Homeobox domain
SMARTSM003895.2E-1475142IPR001356Homeobox domain
PfamPF000461.7E-1877137IPR001356Homeobox domain
CDDcd000861.98E-1477139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0051301Biological Processcell division
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEREIQNEAY NGRVMTEEQM EILRKQIAVY AVICDQLVLL HNSLSSFHPF SSGMRPMVGG  60
YFDPMGSSSS SHRMSTRHRW TPTSTQLQIL ESIYEEGSGT PNRRRIREIA IELSEHGQIT  120
ETNVYNWFQN RRARSKRKQP QTTTTANGQA EDVAVSTEEM RSCGDSGGLE SYEHILFPSP  180
DLGIEHLLSI GKFLES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6160s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412970.0AJ441297.1 Arabidopsis thaliana mRNA for homeodomain protein PALE-2 (pale-2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305646.11e-145WUSCHEL-related homeobox 14
SwissprotQ9LM841e-134WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBLR0I8901e-143R0I890_9BRAS; Uncharacterized protein
STRINGCagra.6160s0026.1.p1e-145(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122111732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.11e-134WUSCHEL related homeobox 14
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]