PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6165s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 255aa    MW: 28565.6 Da    PI: 6.0455
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6165s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.21.4e-102665443
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         e k +r v  skRr++++ KA  L+ L +a+vav + s+ 
  Cagra.6165s0001.1.p 26 ETKQQRAVACSKRRQTVFSKAADLCLLSGANVAVFVTSPA 65
                         77999*******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.8531563IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-181574IPR002100Transcription factor, MADS-box
CDDcd002664.28E-231695No hitNo description
SuperFamilySSF554552.75E-1617102IPR002100Transcription factor, MADS-box
PfamPF003191.8E-92673IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQSSSSVSES TTKKGTKRKI EIKKRETKQQ RAVACSKRRQ TVFSKAADLC LLSGANVAVF  60
VTSPAESSDV VYSFSGYSPA HEIADCYLNR KPPPKFVVNP QSKLGFWWED PDLYKSCDDL  120
SELNMIEDRI ERMKKHVMAC LEKKEKSQSV SNSEQNPSSS VHECFNDQTL ASSFHGDRNP  180
NFSTQSSSQV GSFYQNPYSS LDKICGESSS QVASTYPNLN SEIQGCDETE DETNLIMNRP  240
HLQETQTKEN INWE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6165s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637356.11e-166agamous-like MADS-box protein AGL97
TrEMBLR0HBN41e-169R0HBN4_9BRAS; Uncharacterized protein
STRINGCagra.6165s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.16e-91AGAMOUS-like 39