PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.6254s0027.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

WOX

Protein Properties

Length: 264aa MW: 29101.2 Da PI: 6.6778

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.6254s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.9	9.6e-15	18	78	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Cagra.6254s0027.1.p 18 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLekfgVVGDANVFYWFQNRRSRSRR 78 89***************99************999999*************997 PP
2	Wus_type_Homeobox	105	5e-34	17	80	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G ++d+NVfyWFQNr++R+r++q Cagra.6254s0027.1.p 17 VRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEKFGVVGDANVFYWFQNRRSRSRRRQ 80 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.19E-14	9	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-8	12	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.932	14	79	IPR001356	Homeobox domain
SMART	SM00389	4.1E-5	16	83	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-12	18	78	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDQEGTTQSP STSTEPVRSR WSPKPEQILI LESIFNSGIV NPPKDETVRI RKMLEKFGVV 60 GDANVFYWFQ NRRSRSRRRQ RQIQAATAAA ATSVRAEDLQ HMTAMSMHQY PYSNSEIDLG 120 FGSCSNSSAN YFLNGTSSSS QVSSFLLGLS SSSGGCESNN GMENLFTMYG HESDHHQHSS 180 NAHSVLSLSD DNSNFQYQQG LMTVFINGVP TEVTKGRIDM KATFGEGSVL LHSSGLPLPT 240 DEFGFLLHSL QHGQSYFLVP RQT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.6254s0027.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY251403	0.0	AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006290080.1	1e-157	WUSCHEL-related homeobox 12
Swissprot	Q8GY25	1e-136	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	R0HGR8	1e-156	R0HGR8_9BRAS; Uncharacterized protein
STRING	Cagra.6254s0027.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-122	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	Cagra.6254s0027.1.p

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]