PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.6288s0001.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GeBP

Protein Properties

Length: 255aa MW: 29117.2 Da PI: 7.8033

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.6288s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	35.9	2.1e-11	84	114	2	32
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsd 32 +fqr+wse+De+++LqGlid+k++t+ ++ + Cagra.6288s0001.1.p 84 NFQRVWSEDDEVAILQGLIDYKTDTKGEALE 114 79********************999876555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.4E-7	85	113	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MTFKRFTRVF EGFFKVDPNI LVLTEKKVEA GVTVKKVEAP MKLVVTEKQE VNRSVEKRSP 60 ETTNEGDSVK RVKVSEKKEK KKPNFQRVWS EDDEVAILQG LIDYKTDTKG EALESTGKSK 120 RVASLKHEDA ERVSSSLVRT LVYVGVDELA AQQGLSMIAL EDKKRYEEQK ALQAREFDFY 180 SEKAKFLHQI TLVHFGVDEL AAQQGLSRLA SEDMKRYEEQ WKALQAREFD FYSEKAGLLH 240 QMLAEMVEAS RSNV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.6288s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023633405.1	1e-102	probable transcription factor At1g11510
TrEMBL	R0GLZ1	1e-158	R0GLZ1_9BRAS; Uncharacterized protein
STRING	Cagra.6288s0001.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33604	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	2e-19	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Cagra.6288s0001.1.p