PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6357s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 258aa    MW: 26714.9 Da    PI: 4.6079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6357s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1694142255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Cagra.6357s0007.1.p  94 LYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPTPEMAAAAYDVAALALKG 142
                          69***9.55.6*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.6E-1093142IPR001471AP2/ERF domain
CDDcd000189.02E-1793152No hitNo description
SuperFamilySSF541717.19E-1894152IPR016177DNA-binding domain
PROSITE profilePS5103219.94194150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-2694152IPR001471AP2/ERF domain
SMARTSM003804.3E-2894156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGDPKNAITE PKAISQASSS SVTTIVPVRT CGDSLSDSAT CENPCPLDSI TSTTTTTTTT  60
VSFAAPCNST TSGNDIITLM ATDPDISRRK KHPLYRGIRC RSGKWVSEIR EPKKTTRVWL  120
GTYPTPEMAA AAYDVAALAL KGGDTVLNFP DSVGSYPIPL SSSAAHIRCA AAAAAAAAGA  180
CAATSAAAVK GGEKKEEEVC DGAGSSNTQF VDEEELLNMP GLLADMAKGM MVAPPWMGSP  240
PSDDSPENSD GERLWSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6357s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301753.10.0ethylene-responsive transcription factor ERF026
SwissprotQ9CAN91e-112ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLR0GG540.0R0GG54_9BRAS; Uncharacterized protein
STRINGCagra.6357s0007.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.16e-41ERF family protein