PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6493s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 129aa    MW: 14966.6 Da    PI: 10.1596
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6493s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.7e-1114103383
                          EE-..-HHHHTT-EE--HHH.HTT........---.....--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh........ggkke...esktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                          k+ltp dv ++grl lp++ +  +        +   +   ++++l + d ++++s++v l+ r++s+ y+l+ GW +  k+ gLk gD +
  Cagra.6493s0001.1.p  14 KTLTPTDVDQHGRLLLPRSQILLIfkkmkditK---KsllKGIQLEVLDiTQNNSYSVFLKSRNSSKDYFLGMGWTKLRKSLGLKKGDNI 100
                          99******************8777777765543...14458889999997788*******99**************************99 PP

                          EEE CS
                   B3  81 vFk 83 
                           ++
  Cagra.6493s0001.1.p 101 KLY 103
                          887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-1310105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1510107IPR015300DNA-binding pseudobarrel domain
CDDcd100172.85E-1311116No hitNo description
SMARTSM010196.4E-912117IPR003340B3 DNA binding domain
PfamPF023622.8E-814104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEDFRIDGDM IISKTLTPTD VDQHGRLLLP RSQILLIFKK MKDITKKSLL KGIQLEVLDI  60
TQNNSYSVFL KSRNSSKDYF LGMGWTKLRK SLGLKKGDNI KLYWDYLNYK FIILNFEYSL  120
IPESPLRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6493s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296022.14e-57putative B3 domain-containing protein At2g21920
SwissprotQ9SJ074e-55Y2192_ARATH; Putative B3 domain-containing protein At2g21920
TrEMBLR0HCB32e-84R0HCB3_9BRAS; Uncharacterized protein
STRINGCagra.6493s0001.1.p1e-86(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15428310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.12e-19B3 family protein