PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.6594s0025.2.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 230aa MW: 25333.7 Da PI: 9.886

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.6594s0025.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.6e-14	80	124	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Cagra.6594s0025.2.p 80 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 124 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.31E-17	74	130	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.6	75	129	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-7	77	130	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-18	78	127	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-11	79	127	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-12	80	124	IPR001005	SANT/Myb domain
CDD	cd00167	1.34E-9	82	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
VPKILSQSES ENAKRIAIFE SSMVSVNPRP KGFPFVDPVD MSLPASSEGF GSAPVTGRTV 60 SFSEDPATKI RKPYTIKKSR ENWTEQEHDK FLEALHLFDR DWKKIEAFVG SKTVVQIRSH 120 AQKYFLKVQK SGANEHLPPP RPKRKAIHPY PQKAPKNVAF TSHVIGSLPS SSSTPLLEPG 180 YLYSSDPQSL LGNQAVCASS SSSWNHESTN LPKPVIEEEP GVSATALPKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.6594s0025.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023636724.1	1e-150	protein REVEILLE 5 isoform X2
Swissprot	C0SVG5	1e-123	RVE5_ARATH; Protein REVEILLE 5
TrEMBL	R0HBL4	1e-164	R0HBL4_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006288162.1	1e-160	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.1	1e-115	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Cagra.6594s0025.2.p

Publications ? help Back to Top
Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]